Spaghetti Squash Au Gratin Recipe
Introduction
Spaghetti Squash Au Gratin is a comforting and creamy twist on a classic dish. This recipe transforms tender roasted spaghetti squash into a cheesy, baked casserole with a golden breadcrumb crust. It’s perfect for a cozy dinner or as a side dish to impress your guests.

Ingredients
- 1 large spaghetti squash (about 3-4 pounds)
- 4 tablespoons unsalted butter, divided
- 1 medium yellow onion, finely chopped
- 2 cloves garlic, minced
- 4 tablespoons all-purpose flour
- 3 cups whole milk
- 1/2 teaspoon salt, plus more to taste
- 1/4 teaspoon black pepper, plus more to taste
- 1/4 teaspoon nutmeg
- 1 cup grated Gruyere cheese, divided
- 1 cup grated sharp cheddar cheese, divided
- 1/2 cup grated Parmesan cheese, divided
- 1/4 cup panko breadcrumbs
- 2 tablespoons chopped fresh parsley, for garnish (optional)
Instructions
- Step 1: Preheat oven to 400°F (200°C).
- Step 2: Cut the spaghetti squash in half lengthwise and scoop out the seeds and stringy bits.
- Step 3: Drizzle the cut sides with 2 tablespoons melted butter, then season generously with salt and pepper.
- Step 4: Place the squash halves cut-side down on a parchment-lined baking sheet. Roast for 45–60 minutes, until tender and easily pierced with a fork.
- Step 5: Let the squash cool enough to handle, then use a fork to shred the flesh into spaghetti-like strands and set aside.
- Step 6: In a large saucepan over medium heat, melt the remaining 2 tablespoons butter.
- Step 7: Add the chopped onion and cook until softened and translucent, about 5–7 minutes. Add the minced garlic and cook for another minute until fragrant.
- Step 8: Sprinkle the flour over the onion and garlic mixture and cook, stirring constantly, for 1–2 minutes to create a roux.
- Step 9: Gradually whisk in the milk, a little at a time, until smooth with no lumps.
- Step 10: Bring the sauce to a simmer, stirring constantly. Reduce heat to low and simmer for 5–7 minutes until slightly thickened.
- Step 11: Stir in the salt, pepper, and nutmeg. Adjust seasoning to taste.
- Step 12: Remove from heat and stir in 3/4 cup Gruyere, 3/4 cup cheddar, and 1/4 cup Parmesan until melted and creamy. Reserve remaining cheese for topping.
- Step 13: Gently fold the shredded spaghetti squash into the cheese sauce.
- Step 14: Pour the mixture into a greased 9×13 inch baking dish.
- Step 15: In a small bowl, combine the remaining 1/4 cup Gruyere, 1/4 cup cheddar, 1/4 cup Parmesan, and panko breadcrumbs.
- Step 16: Sprinkle the cheese and breadcrumb mixture evenly over the top.
- Step 17: Bake for 20–25 minutes until the topping is golden brown and bubbly.
- Step 18: Remove from oven and let rest for 5–10 minutes before serving.
- Step 19: Garnish with chopped parsley if desired, then serve hot and enjoy!
Tips & Variations
- For extra flavor, add a pinch of smoked paprika or cayenne pepper to the cheese sauce.
- Swap Gruyere for mozzarella or fontina if you prefer a milder cheese.
- Use gluten-free flour and breadcrumbs to make this dish gluten-free.
- Add cooked bacon or sautéed mushrooms for a hearty twist.
Storage
Store leftovers in an airtight container in the refrigerator for up to 3 days. Reheat gently in the oven at 350°F (175°C) until warmed through to retain the crispy topping. Avoid microwaving to keep texture intact.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I prepare the spaghetti squash ahead of time?
Yes, you can roast and shred the spaghetti squash a day ahead. Keep it refrigerated until you’re ready to make the sauce and bake.
What if I don’t have fresh parsley for garnish?
The dish is flavorful on its own, but you can substitute dried parsley or chopped chives for a burst of fresh color.
PrintSpaghetti Squash Au Gratin Recipe
Spaghetti Squash Au Gratin is a comforting and creamy casserole that combines tender roasted spaghetti squash with a rich cheese sauce made from Gruyere, sharp cheddar, and Parmesan. The dish is topped with a crispy golden breadcrumb and cheese crust, making it a delicious low-carb alternative to traditional potato gratin. Perfect as a hearty side or a vegetarian main, this recipe offers a flavorful way to enjoy spaghetti squash with a decadent cheesy twist.
- Prep Time: 20 minutes
- Cook Time: 1 hour 15 minutes
- Total Time: 1 hour 35 minutes
- Yield: 6 servings 1x
- Category: Side Dish
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Squash
- 1 large spaghetti squash (about 3–4 pounds)
- 2 tablespoons unsalted butter, melted (for brushing)
- Salt and black pepper, to taste
Sauce
- 2 tablespoons unsalted butter
- 1 medium yellow onion, finely chopped
- 2 cloves garlic, minced
- 4 tablespoons all-purpose flour
- 3 cups whole milk
- 1/2 teaspoon salt, plus more to taste
- 1/4 teaspoon black pepper, plus more to taste
- 1/4 teaspoon nutmeg
Cheese
- 1 cup grated Gruyere cheese, divided
- 1 cup grated sharp cheddar cheese, divided
- 1/2 cup grated Parmesan cheese, divided
Topping
- 1/4 cup panko breadcrumbs
- 2 tablespoons chopped fresh parsley, for garnish (optional)
Instructions
- Preheat the oven: Set your oven to 400°F (200°C) to get it ready for roasting the squash and baking the gratin.
- Prepare the squash: Cut the spaghetti squash lengthwise into two halves. Scoop out the seeds and stringy pulp from the center to create hollow cavities.
- Season the squash: Brush the cut sides of each squash half generously with 2 tablespoons of melted butter, then sprinkle with salt and black pepper to taste for added flavor.
- Roast the squash: Place the halves cut-side down on a parchment-lined baking sheet. Roast for 45-60 minutes until the flesh is tender and can be pierced easily with a fork.
- Shred the squash: When cool enough to handle, use a fork to scrape and shred the flesh into spaghetti-like strands. Set aside for the sauce preparation.
- Melt the butter: In a large saucepan over medium heat, melt the remaining 2 tablespoons of butter to start the sauce base.
- Sauté the onion and garlic: Add the finely chopped onion and cook for 5-7 minutes until softened and translucent. Stir in minced garlic and sauté for an additional minute until fragrant.
- Make the roux: Sprinkle the flour over the onion and garlic mixture, stirring constantly for 1-2 minutes to form a smooth roux which will thicken the sauce.
- Whisk in the milk: Gradually add the milk a little at a time, whisking continuously to avoid lumps and achieve a smooth sauce.
- Simmer the sauce: Bring the sauce to a gentle simmer over medium heat, stirring constantly. Reduce to low heat and cook for 5-7 minutes until it thickens slightly.
- Season the sauce: Stir in salt, pepper, and nutmeg. Taste and adjust the seasoning as needed for a balanced flavor.
- Add the cheese: Remove from heat and incorporate 3/4 cup of Gruyere, 3/4 cup of cheddar, and 1/4 cup of Parmesan cheese. Stir until the cheese melts and the sauce becomes creamy.
- Combine squash and sauce: Fold the shredded spaghetti squash gently into the cheese sauce until well combined, ensuring every strand is coated.
- Transfer to baking dish: Pour the mixture into a greased 9×13 inch baking dish, spreading it evenly.
- Prepare the topping: In a small bowl, mix the remaining 1/4 cup Gruyere, 1/4 cup cheddar, 1/4 cup Parmesan cheese with the panko breadcrumbs to create a crunchy topping.
- Sprinkle the topping: Evenly distribute the cheese and breadcrumb mixture over the top of the squash mixture in the baking dish.
- Bake the gratin: Place the dish in the oven and bake for 20-25 minutes until the topping is golden brown and bubbly, indicating a perfect crust.
- Rest before serving: Remove from the oven and allow the gratin to rest for 5-10 minutes, setting the flavors and making it easier to serve.
- Garnish and serve: Optionally sprinkle with fresh chopped parsley for a pop of color and fresh flavor, then serve the gratin hot and enjoy your delicious meal.
Notes
- The baking time for the squash may vary depending on its size and oven; test doneness with a fork.
- You can substitute whole milk with 2% milk, but whole milk provides a richer sauce.
- For a gluten-free version, use gluten-free flour and breadcrumbs.
- Leftovers keep well refrigerated for up to 3 days and reheat nicely in the oven.
- To add a bit of protein, consider mixing in cooked bacon or ham before baking.
- If you prefer a spicier dish, add a pinch of cayenne pepper or red chili flakes to the sauce.
Keywords: spaghetti squash, au gratin, cheesy casserole, roasted squash, vegetarian recipe, comfort food

